2006-2007 Research Class

Photo of the class at Regional Lab visit July 13, 2006 Lab visit July 13, 2006
BioGENEius Challenge
Science Fair Grand Prize Winners ISEF
Kaitlyn Creasy (Class of 2007) worked in the laboratory of Karen Oberhauser at the University of Minnesota. Kaitlyn investigated tachinid parasitism of non-target monarch butterflies. She raised tachinid flies in the lab to study their biology and determined average number of flies laid per monarch larva. Her results showed 6% of wild monarch larvae died from tachinid parasitism. She also found that male tachinids are larger and emerge later than females. Data from a small sample size indicated that maximum number of tachinid eggs laid per monarch larva was three. Kaitlyn’s study indicates there may be adverse effects on monarch butterfly population when using tachinid flies for biological control. Kaitlyn's paper and PowerPoint can be accessed here.

Siddharth Damania (Class of 2008) collaborated on a project with Ginny Dines at the University of Minnesota, working in the Department of Biochemistry and Molecular Biology under the supervision of Dr. David Thomas. They examined the structure of pentameric phospholamban, a 52- amino acid protein that binds to the calcium pump in the cardiac muscle and inhibits calcium flow in and out of heart muscles. Ginny and Siddharth attempted to develop a more efficient fluorescamine assay to spin-count spin-labeled phospholamban. The improved assay was based on a direct relationship between amine concentration and fluorescent intensity in a fluorescamine lysine reaction. While they were unable to optimize the assay because of an unexpected reaction between the spin-label and fluorescamine and instability of proteins due to high concentration of acetone required, they were able to develop a standard curve of fluorescent intensity vs. primary amine concentration in both lysine and phospholamba. Siddharth's paper and PowerPoint can be accessed here.

Ginny Dines (Class of 2007) collaborated on a project at the University of Minnesota with Siddharth Damania, working in the Department of Biochemistry and Molecular Biology under the supervision of Dr. David Thomas. They examined the structure of pentameric phospholamban, a 52- amino acid protein that binds to the calcium pump in the cardiac muscle and inhibits calcium flow in and out of heart muscles. Ginny and Siddharth attempted to develop a more efficient fluorescamine assay to spin-count spin-labeled phospholamban. The improved assay was based on a direct relationship between amine concentration and fluorescent intensity in a fluorescamine lysine reaction. While they were unable to optimize the assay because of an unexpected reaction between the spin-label and fluorescamine and instability of proteins due to high concentration of acetone required, they were able to develop a standard curve of fluorescent intensity vs. primary amine concentration in both lysine and phospholamba. Ginny's paper and PowerPoint can be accessed here.
Shannon Engelman (Class of 2007) worked in the laboratory of Dr. Cindy Tong at the University of Minnesota. Shannon investigated effects of the herbicide 2,4-dichlorophenoxyacetic acid (2,4-D) on the color of Red Norland potato tubers. This red color is due to anthocyanin pigments in potato skins that have important antioxidant properties. Shannon’s first objective was to determine visible effects of 2,4-D. She found that light intensity and hue angle of anthocyanins in potato skins decreased with 2,4-D application. Her results also indicated that 2,4-D does not significantly increase anthocyanin accumulation. The second objective of her project was to use qPCR to quantify expression of dihydroflavonol-reductase and flavonol 3-O-glucosyltransferase, two genes in the anthocyanin biosynthesis pathway. At this time, Shannon is still working to achieve her second goal. Shannon's paper and PowerPoint can be accessed here.
Tracy Fuad (Class of 2007) worked in the laboratory of Dr. Pratima Bansal-Pakala at the University of Minnesota. Tracy designed a predictive ELISPOT assay for success rates of islet transplants in type-1 diabetics. The first step in her project was to determine whether the ELISPOT assay was effective in quantifying immune response. Then, she found optimal levels of primary and secondary antibody to use in the ELISPOT assay, as well as optimal cell numbers and patient to islet donor-cell ratios. Additionally, she modified the ELISPOT protocol to increase clarity by washing and increasing blocking-buffer concentration. Tracy’s results showed a direct correlation between lowered immune response and successful islet transplants. Tracy's paper and PowerPoint can be accessed here.
Egal Gorse (Class of 2007) worked in the laboratory of Dr. Vallera at the University of Minnesota. Egal researched an experimental class of biological drugs called immunotoxins, specifically studying gene therapy using transfection. He measured growth of cancerous cell lines against cell lines that had been transfected with immunotoxins. His results showed transfection was successful in mouse embryo cells, transgenic mice prostate cancer cells, mouse-breast cancer cells, and mouse-colon cancer cell. Transfection was less successful in human-colon cancer cells and human-breast cancer cells. While transfection showed more promise in mouse cells lines than in human-cell lines, both cell lines accepted genes from the immunotoxin and curbed growth of cancerous cells. Egal's paper and PowerPoint can be accessed here.
Paul Grandstrand (class of 2007) worked in the laboratory of Dr. Andy Rundquist at Hamline University. Paul wrote a LabVIEW program that ultimately will be used to investigate nonlinear oscillations in intermolecular bonds, work that may lead to advancements in medicine. The program that Paul wrote optimized a pendulum system using a genetic algorithm. He constructed a pendulum system that used energy from a magnetic field that was induced in a solenoid. He controlled electrical inputs and outputs of the system with a National Instruments USB 6008. To provide sufficient current to the solenoid, Paul wired a transistor to an external power supply to supply current. The program that Paul wrote was a success in optimizing the pendulum system that he engineered. Paul's paper and PowerPoint can be accessed here.
Brandon Lew (class of 2007) continued his research into a second year, working in the Chemistry Department at Hamline University under the guidance of Dr. John Matachek. Brandon investigated anthocyanin pigments that cause purple coloration in pod coats of snap beans, Phaseolus vulgaris cv. Blauhilde, the second most important bean crop. Anthocyanins have anti-oxidative and anti-carcinogenic properties, so these plant pigments are of interest to pharmaceutical companies. However, anthocyanins in the bean pod coats degrade during cooking. Brandon identified eight different anthocyanin pigments using high-performance liquid chromatography coupled with mass spectroscopy. The next step of his project will be to modify the anthocyanin pigments in living plants using genetic engineering, so the pods will retain beneficial anthocyanins during cooking. Brandon's paper and PowerPoint can be accessed here.

JulieAnn Rader (Class of 2007) worked in the laboratory of Dr. Michael Russelle at the University of Minnesota. JulieAnn looked at effects of nitrate fertilizer concentration on atmospheric nitrogen fixation in pea plants. When insufficient nitrate is available in soil, plants convert atmospheric nitrogen to usable nitrogen through a fixation process. To accomplish her goal, JulieAnn fertilized pea plants with 0 (control), 10, 30, 100, and 500 ppm concentrations of nitrate labeled with N-15. Using mass spectroscopy, she quantified labeled nitrogen assimilated as opposed to atmospheric nitrogen fixed by the peas. Her results indicated that pea plants fertilized with higher nitrate concentrations fixed less nitrogen than plants fertilized with low nitrate concentrations. JulieAnn's paper and PowerPoint can be accessed here.

Sara Schilling (class of 2007) worked in the laboratory of Dr. Kathy Olson at the University of St. Thomas. She continued a project begun by Katie Shaeffer (class of 2006). Sara looked at ways in which ferric uptake regulatory protein (Fur) activates transcription of superoxide dismutase gene (sodA) in Escherichia coli, where the sod protein plays a vital role in breaking down cancer-causing superoxide radicals. Sara used reverse-transcription, PCR, and gel electrophoresis to determine how different metal-ion complexes of Fur affected sodA activation. She also investigated effects of protein concentration on transcription. Her results suggested that the zinc-ion form of Fur most effectively activates sodA and that activation increases with protein concentration. Sara’s research gives a deeper understanding of Fur-sodA interactions and may assist in future cancer studies. Sara's paper and PowerPoint can be accessed here.
Matthew Weiss (class of 2007) continued his research into a second year, working in the Chemistry Department at Macalester College under the guidance of Dr. Ronald Brisbois. Matt’s project dealt with self-assembling macromolecular structures of oxadiazole molecules. He developed acylation, cycloaromatization, and purification protocols to synthesize five different oxadiazole molecules. He started working with three symmetrical oxadiazole molecules to develop his protocols; then, he used two more complex asymmetrical oxadiazole molecules to study their potential to self-assemble, using metal-ion ligation with palladium(II) chloride. Matt also developed a purification procedure using recrystalization and flash chromatography. Using the protocols that he developed and refined, Matt successfully formed macromolecular structures using self-assembly with an oxadiazole molecule and palladium(II) chloride. Matt's paper and PowerPoint can be accessed here.

 

 


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